The 1946 Jacksonville State Eagle Owls football team represented Jacksonville State Teachers College (now known as Jacksonville State University) as a member of the Alabama Intercollegiate Conference (AIC) during the 1946 college football season.
Led by first-year head coach Don Salls, the Gamecocks compiled an overall record of 3–5–1 with a mark of 1–1–1 in conference play.
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