The 1987–88 FC Bayern Munich season was the 88th season in the club's history and 23rd season since promotion from Regionalliga Süd in 1965.

Bayern Munich finished as runner-up in the Bundesliga to SV Werder Bremen.

The club reached the quarterfinals of both the DFB-Pokal and the European Cup.

The inaugural DFB-Supercup was won by Bayern Munich over Hamburger SV.

This season was the first season under manager Jupp Heynckes, who replaced Udo Lattek.