[1] Alongside Augsburg five other clubs from the Bayernliga qualified for the new Regionalliga, SpVgg Fürth and TSV Vestenbergsgreuth who would merge In 1996, SV Lohhof, SpVgg Unterhaching and the reserve team of FC Bayern Munich.
[2] Runners-up SV Lohhof also qualified for the German amateur championship, where it came last in the southern group and was knocked-out.
[3] Because of the departure of six clubs to the new Regionalliga only one team was relegated from the league, last placed SpVgg Plattling.
For Plattling, who had first entered the league in 1950 and spend 25 seasons at this level all up, it was the end of an era as the club did not return to the Bayernliga after 1994.
SpVgg Unterhaching, the 1991–92 Bayernliga champions, returned to the league after just a single season in the 2.
Six clubs from the Bayernliga qualified for the new Regionalliga, based on a points system that took the last three seasons into account.