San Jose was forced to play the first three home games of the season at Stanford University after winter rains delayed the renovation on Spartan Stadium.
Ronald Cerritos again led the team, putting in 13 goals to finish the season as the eighth leading goal-scorer in the league.
San Jose picked up Francisco Uribe, Harut Karapetyan, and Brian Sebapole hoping to boost the Clash offense that already had Eddie Lewis, Jeff Baicher, Ronald Cerritos and Eric Wynalda, but failed to help lead the team to the playoffs.
Joe Cannon was called to the club from the A-League to serve as a backup for ten days before returning to soccer's minor leagues, he played the final 45 minutes against Toluca yielding 1 goal in an exhibition.
The club was forced to play through May and June without forward Eric Wynalda, who was with the United States National Team at the World Cup in France.