[1] Negeri Sembilan NAZA garnered 40 points from 21 matches and won the title despite scoring less goals than all the other teams in the league except Pahang, who finished second from bottom.
With this title, they finally erased the painful memory of losing the 1996 M-League crown having topped the table for most of that season.
Having been in the title contention for most of the season, they were the best positioned club side in Liga Super history after Public Bank in 2004.
As a result of the FAM decision to expand the league to 14 teams, the relegation playoffs were held on 18 June 2006.
Pahang and Selangor qualified for this competition by virtue of being the lowest placed Super League teams.