He repeated his second place finish in the standings from 2003 by beating Travis Gregg, who scored a field-record six pole positions and won three races with defending champions Sam Schmidt Motorsports.
Jaime Camara, also driving for Schmidt, won the Freedom 100 from pole position ahead of Cunningham, adding another win at Nashville to finish fifth behind fellow rookie Nick Bussell.
Driving a partial schedule, 18-year old Marco Andretti set the standard at the road course races with three wins, being only beaten by Simmons at Watkins Glen.
Marty Roth competed again in both the Indianapolis 500 and the Freedom 100, where he was one of three starters with previous IndyCar experience along with Simmons and Jon Herb, the winner at Phoenix earlier in the year.
The Texas date was moved to June after the fall event was discontinued by IndyCar, with California Speedway serving as the venue for the season finale.