2006–07 was Bolton Wanderers Football Club's eighth season in the Premier League, and their sixth consecutive season in the top division of English football and covers the period from 1 July 2006 to 30 June 2007.

Bolton overcame the previous season's disappointment of failing to qualify for Europe and finished in seventh, enough for UEFA Cup football.

Three games before the end of the season, manager Sam Allardyce announced his resignation as Bolton manager and was replaced by Sammy Lee for the final three games of the season.

Source: 11v11 Note: Flags indicate national team as defined under FIFA eligibility rules; some limited exceptions apply.

Note: Flags indicate national team as defined under FIFA eligibility rules; some limited exceptions apply.