The 2006–07 Kent Football League Challenge Cup was won by Thamesmead Town.
The competition was played by the 17 teams form the Premier Division One initially organised into four groups.
At the end of the season Ashford Town (Kent) R were relegated and Bromley R left the league.
The division featured thirteen clubs, eight of which competed in the previous season together with five additional clubs: At the end of the season Chatham Town R and Margate R were promoted to Division One and Tilbury R left the League.
this season) Byes for the remaining seven teams Source: Kent League (archived)