The champions of this season, Neuchâtel Xamax, earned promotion to the 2007–08 Super League.
The bottom tho teams, FC Baulmes and YF Juventus, were relegated to the 1.
[1] As 9th-placed team of the 2006–07 Swiss Super League FC Aarau played a two-legged play-off against Challenge League runners-up AC Bellinzona for a spot in the 2007–08 Super League.
Aarau won 5–2 on aggregate and retain their place in the Swiss Super League.
Bellinzona remain in the Swiss Challenge League.