The 2006 Conference USA Football Championship Game was played on December 1, 2006 at Robertson Stadium in Houston to determine the 2006 football champion of the Conference USA (C-USA).

The game featured the Southern Miss Golden Eagles, the East Division champions, and the Houston Cougars, the West Division champions.

[1] With the win, the Houston Cougars won the second-ever Conference USA championship game and grabbed their first Conference championship since 1996.

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