The 2008–09 EHF Cup season was the 28th edition of the tournament.

VfL Gummersbach won the Europe's club handball tournament.

HSG Nordhorn were the reigning champions.

* Cancelled because 2008 South Ossetia war The first legs were played on 28–29 March and the second legs were played on 4–5 April.

The first legs were played on 25 April and the second legs on 1–3 May.