The 2008–09 season was Pécsi Mecsek Football Club's 44th competitive season, 2nd consecutive season in the Nemzeti Bajnokság II and 58th year in existence as a football club.

In addition to the domestic league, Pécs participated in this season's editions of the Magyar Kupa and Ligakupa.

The players listed had league appearances.

Note: Flags indicate national team as defined under FIFA eligibility rules; some limited exceptions apply.

Players may hold more than one non-FIFA nationality.