The 2012–13 season was a FK Vardar's 21st consecutive season in First League.

This article shows player statistics and all official matches that the club was played during the 2012–13 season.

In that season Vardar was won the championship for the second consecutive time, sixth time in his history.

[1] As of March, 2013 Note: Flags indicate national team as defined under FIFA eligibility rules; some limited exceptions apply.

Players may hold more than one non-FIFA nationality.