The 2012–13 Florida Atlantic Owls men's basketball team represented Florida Atlantic University during the 2012–13 NCAA Division I men's basketball season.

The Owls, led by fifth year head coach Mike Jarvis, played their home games at the FAU Arena, and were members of the East Division of the Sun Belt Conference.

They lost in the first round of the Sun Belt tournament to Troy.

[1] This was the Owls final season as a member of the Sun Belt.

In July, 2013, they will join Conference USA.