Morelia was eliminated in the quarter-finals by América and Cruz Azul in the Apertura and Clausura tournaments respectively.

Note: Flags indicate national team as defined under FIFA eligibility rules; some limited exceptions apply.

Win Draw Loss América advanced 3–2 on aggregate Source:[21]

Source: Apertura 2012 results Win Draw Loss [23] Note: Flags indicate national team as defined under FIFA eligibility rules; some limited exceptions apply.

Win Draw Loss Cruz Azul advanced 4–3 on aggregate Source:[42]