For the second season, the competition included all teams from Malta and Gozo.
The competition began on 1 September 2013 and ended on 4 May 2014 with the final in Ta' Qali Stadium.
The defending champions were Hibernians, having won their 10th Maltese Cup last season, but were eliminated by Pietà Hotspurs in the fourth round.
Hibernians were the defending champions, but were eliminated in the Fourth Round by Pietà Hotspurs.
The last time Valletta and Sliema Wanderers met together in Maltese FA Trophy was during the 2011-12 fourth round when Valletta beat Sliema Wanderers by 5–2.