The 2013 Nippon Professional Baseball (NPB) Draft was held on October 24, 2013, for the 49th time at the Grand Prince Hotel Takanawa to assign amateur baseball players to the NPB.

[1]　It was arranged with the special cooperation of Taisho Pharmaceutical with official naming rights.

After the second round, waver selections were made in order from the lowest-ranked team of the 2013 season in both the Central and Pacific League, the third round was reversed and selections were made from the top team, and the fourth round was reversed again, alternating with selections from the lowest-ranked team until all teams had finished selecting players.

[3] Since the 2005 season, the winner of the NPB All-Star Game has determined whether the Central League or the Pacific League gets waiver preference after the second round.

However, the 2013 All-Star Game ended with a 1–1–1 record, so the decision was made by lot, with the Pacific League receiving waiver preference.