FC Ingolstadt will also participate in this season's edition of the domestic cup, the DFB-Pokal.

The season covers a period from 1 July 2016 to 30 June 2017.

On 6 May 2016, Markus Kauczinski was confirmed to replace Ralph Hasenhüttl as head coach for the season.

[1] Note: Flags indicate national team as defined under FIFA eligibility rules; some limited exceptions apply.

* Includes one shared clean sheet against RB Leipzig.