The 2016–17 season was the 118th season in the history of Leyton Orient Football Club, their 101st in the Football League, and the second consecutive season in Football League Two.

Includes all competitive matches.

The list is sorted by squad number when total goals are equal.

The list is sorted by position, and then shirt number.

Last updated: 29 April 2017Source: [citation needed]Ordered by , and = Number of bookings; = Number of sending offs after a second yellow card; = Number of sending offs by a direct red card.