The 2020 FC Kaisar season was the club's fourth season back in the Kazakhstan Premier League, the highest tier of association football in Kazakhstan, and 23rd in total.

On 29 February they began their season losing 1–0 to Astana in the Kazakhstan Super Cup.

On 13 March, the Football Federation of Kazakhstan announced all league fixtures would be played behind closed doors for the foreseeable future due to the COVID-19 pandemic.

[2] On 30 May, the Professional Football League of Kazakhstan announced that Irtysh Pavlodar had withdrawn from the league due to financial issues, with all their matches being excluded from the league results.

[4] The league was suspended for a second time on 3 July, for an initial two weeks, due to an increase in COVID-19 cases in the country.