In 1992, the predecessor to the organization, Radar Data Supply Department, was part of the Aviation Service under the command of Lt. Col. V. Pacevičius.

In autumn of 1992, the Lithuanian government assigned the Aviation Service military posts in Karmėlava, Rokai, Juodkrantė, Nemirseta.

The appropriate legal documentation of the BALTNET project was developed, the Reciprocal Memorandum of Understanding concerning military personnel training was signed among Lithuanian, Estonian, Latvian, and Danish Ministries of Defence.

Military personnel from all the three Baltic States serve as air surveillance operators at the centre and rotate according to national timetables.

Personnel from Norway, Belgium, Denmark, Germany, the Netherlands, Great Britain, Turkey, United States share this mission.

Air Forces specialists from Norway and Germany are preparing Fighter command operators from Lithuania, Latvia and Estonia.

Newly prepared operators will change colleagues from other NATO states in Baltic Air Policing mission.