The startup disk on remote computers can also be changed, setting them to boot from a NetBoot server, a Network Install image, or a partition on their own drives.

The client ARD software could also now be upgraded remotely to allow administrators to take advantage of new features without having to visit each individual computer.

[6] On April 11, 2006, Apple released version 3.0 which is now a Universal Binary and features improved software upgrade functionality, Spotlight searching, as well as increased throughput and encryption for file transfers, and Automator support.

On October 18, 2007, Apple released version 3.2 which introduced Mac OS X 10.5 support and compatibility for third-party VNC viewers and servers.

[12] Prior to version 3, ARD encrypted only passwords, mouse events and keystrokes; and not desktop graphics or file transfers.

ARD 3.9 included as yet unspecified enhancements to communications security that made the native mode incompatible with previous-version clients.

A Preferences checkbox was provided in the Apple Remote Desktop app to explicitly allow communications with older clients.

[12] In November 2017, the United States International Trade Commission announced an investigation into allegations of patent infringement with regard to Apple's remote desktop technology.