The battle ended in victory for the Austrians who avoided being trapped by Junot and a force of Saxons and Westphalians led by Jérôme Bonaparte, King of Westphalia.
In response Duke Frederick William invaded Saxony and took the city of Zittau, forcing von Thielmann to retreat back to Dresden.
Meanwhile, another force of 6,000 men under Paul von Radivojevich wheeled south into Bavaria, another French ally, capturing Bayreuth on 14 June.
On 22 June, in face of the worsening situation in Saxony and northern Bavaria, Napoleon's brother Jérôme, who was also King of Westphalia, left Kassel with a force of 15,000 men including his Royal Guard Division.
In addition, General Junot had arrived in Frankfurt and took command of the Corps of Observation of the Elbe, an army hastily assembled to guard the Confederation of the Rhine.
This meant the Austrians were able to deliver heavy and sustained volley fire throughout and by the end of the day, most of the French infantry had fled the field of battle.
Duke Frederick William and his Black Brunswickers gave chase forcing Jérôme all the way back to Erfurt and the western borders of Saxony.
However, by the time Jérôme and his army had arrived safely in Erfurt, news of the French victory at Wagram and the resulting armistice at Znaim had reached Saxony.
Refusing to agree to the peace between Austria and France, the Black Duke decided to take matters into his own hands and make for the North Sea with his 2,000 troops.
Despite this the Black Brunswickers still managed to reach the coast and were evacuated to the Isle of Wight in August 1809 on the ships used to land troops at Walcheren.