The second season of the American television series Bones premiered on August 30, 2006, and concluded on May 16, 2007, on Fox.

The show maintained its previous time slot, airing on Wednesdays at 8:00 pm ET for the entire season.

[1] The season saw a reworking of the original opening credits sequence to match each actor's name to footage of their character.

Special features include two audio commentaries—"The Glowing Bones in the Old Stone House" by writer Stephen Nathan, actress Emily Deschanel and director Caleb Deschanel and "Stargazer in a Puddle" by executive producers Stephen Nathan, Barry Josephson and Hart Hanson.

Featurettes include "The Memories in the Season" and "Visceral Effects: The Digital Illusions of Bones".