[1] Snodin was replaced by Mark Robson for the remainder; however, this was short-lived as Charlton faced a managerial re-shuffle after the resignation of Alan Curbishley, Mervyn Day and Keith Peacock.

In their first season they played their matches at Welling United's ground, Park View Road, but the stay was short-lived.

This system continued until the 2006/2007 season, when the team moved their matches to Gravesend & Northfleet's ground, Stonebridge Road.

The reserve team continued to play their games there in the 2007/2008 season, after the change of club name from Gravesend & Northfleet to Ebbsfleet United.

Notable players such as Scott Minto, Kim Grant, Anthony Barness, Lee Bowyer, Richard Rufus, Linvoy Primus, Shaun Newton, Jermain Defoe, Jlloyd Samuel, Jamie Stuart, Kevin Lisbie, Paul Konchesky and Scott Parker all came through the ranks.

This was followed by the creation of the Youth Academy in 1998, aiming to find the best local, and worldwide talent to bring to Charlton at a young age.

Numerous players have gone on to play in the top two tiers of English football, having begun their footballing career at the Charlton Youth Academy, including Carl Jenkinson, Harry Arter, Tareiq Holmes-Dennis, Kasey Palmer, Michael Turner, Robert Elliot, Jonjo Shelvey, Jordan Cousins, Callum Harriott, Darren Randolph, Joe Gomez, Ademola Lookman, Morgan Fox, Dillon Phillips, Ezri Konsa, Karlan Ahearne-Grant, Chris Solly and Harry Lennon.