[11] The club has won the I-League title twice and has secured a position among the top three teams on nine other occasions in the national league.

But, they had a forgetful debut outing as the Goan outfit was knocked out in the very first round by Vietnamese club Dong Thap with a 2–1 aggregate loss.

[34] Through their I-League win Churchill Brothers FC were able to play in the 2010 Asian Champions League qualifiers which they lost and moved to the 2010 AFC Cup.

During the AFC Cup they won two games against Al-Hilal Al-Sahili and finished runners-up in their group, advancing to the next round.

[39][40] His start proved to be successful as the club captured the 2011 Durand Cup for the third time in their history in October 2011, defeating Prayag United 5–4.

[45] After his first season in charge, Dias managed to lead Churchill Brothers to the I-League championship,[46][47][48] their second domestic title in the history.

[56] Churchill then roped in Joseph Afusi of Nigeria as technical director,[57] but were relegated at the end of the 2017–18 season, with just 17 points from 18 games.

[67][68][69][70] Although Churchill managed a win against RoundGlass Punjab in their last match, Gokulam Kerala FC were crowned champions courtesy of a better head-to-head record.

[71][72] Ahead of the 2021–22 I-League, Churchill roped in their first ever Guinean player Sekou Sylla,[73] and Romanian Petre Gigiu returned to the club as head coach.

[75][76] The club later in November, reached final of Baji Rout Cup in Odisha,[77] finished as runners-up after defeat to Rajasthan United.

[78] They later took part in 2023 Indian Super Cup in Kerala in April,[79] and 2024 Bhausaheb Bandodkar Memorial Trophy along with foreign teams like Brisbane Roar and Defensa y Justicia participated.

[111] During the 2013 AFC Cup, Churchill Brothers used Shri Shiv Chhatrapati Sports Complex in Pune as their home ground.

[261][262] Club's midfielder Cia Ryzella Almeida was honoured with "Women's Player of the Year" award by Goa Football Association (GFA) in June 2023.