Founded in 2011, the club is one of the youngest institutions affiliated to the Argentine Football Association.

The club currently plays in Primera Nacional, the second division of the Argentine football league system.

Agropecuario was founded by Bernardo Grobocopatel, a local entrepreneur related to soybean cultivation, who is also owner and president of the club.

The club debuted in the Federal B (the regionalised 4th division) in 2014, where it was defeated by Juventud de Pergamino and eliminated from the competition.

Agropecuario promoted to Federal A in 2016 after beating San Martín de Formosa by penalty shoot-out.