Thomson's stained glass windows can be seen at the Church of St John the Divine, Brooklands in Cheshire, and at Cheltenham Ladies’ College.
[3] The Britomart Windows at Cheltenham Ladies’ College are based upon six pictures taken from Edmund Spenser’s allegory of The Faerie Queene.
Thomson became an illustrator with numerous different commissions - one being: The Fairies – A Child’s Song, written by William Allingham who was part of the Rossetti Circle.
When he saw Thomson's work he contacted her and asked her to do some illustrations for him, but she took so long on the cover for The Nursery "Alice" that in the end the book went to press initially without it.
She also drew a number of Russian refugees for illustrations, including Prince Kropotkin, in Charles Rowley’s book Fifty Years of Work Without Wages.