In the 2005–06 season, Etzella finished third in the National Division, winning a place in the UEFA Cup first qualifying round, where they lost to Åtvidabergs FF of Sweden 7–0 on aggregate.

In 2006–07, the club improved to a second-place finish, this time falling to HJK Helsinki of Finland 3–0 on aggregate in the UEFA Cup first qualifying round.

In 2007–08 season, Etzella slipped to fourth place, but returned to European competition.

FC Etzella have qualified for UEFA European competition seven times.

Note: Flags indicate national team as defined under FIFA eligibility rules; some limited exceptions apply.