For these reasons but under the guise of protecting Copán's tobacco plantations owned by the federal government, Arce decided to oust Herrera.
Under the command of Colonel Remigio Díaz, a detachment of 150 men moved along the bank of the Sicatacaro ravine, headed northwest, from Ojojona to Valle la Trinidad and attacked the enemy rear.
The defeated General José Justo Milla and some of his surviving officers fled the battlefield, leaving documents, trunks, and other supplies.
[4] The reservist force allied under the command of Colonel José María Gutiérrez Osejo and Captain Francisco Ferrera took no further action to pursue Milla.
On November 26, he arrived at the capital Comayagua where he made his triumphal entry and occupied the headquarters of the State of Honduras which was interim chaired by Miguel Eusebio Bustamante.
[5] After his victory in La Trinidad, Morazán emerged as the leader of the liberal movement and became recognized for his military skills throughout the Federal Republic of Central America.
After the battle, President Arce ordered two thousand federal troops under the command of General Manuel de Arzú to occupy El Salvador.
In his memoirs, Morazán described the battle as follows: At 12 o'clock at night I started my journey with this object, but the rain did not allow me to double the day, and I was forced to wait, at the Hacienda de Gualcho, for the weather to improve ... At three in the morning, that the water stopped, I made to place two hunting companies in the height that dominates the hacienda, to the left ... At five I knew the position that this (the enemy) occupied ..
I could even less defend myself on the hacienda, placed under a height of more than 200 feet that in a semicircle dominates the main building with a pistol shot, cut at the opposite end with an inaccessible river that serves as a moat.
On September 20, General Arzú was near the Lempa River with five hundred men in search of Morazán when he learned that his forces had capitulated in Mejicanos and San Salvador.
General Arzú, fighting illness, fled back to Guatemala, leaving his troops under the command of Lieutenant Colonel Antonio de Aycinena.
[9] Irisarri was taken prisoner and was only saved from execution when a soldier pleaded for his life; He was sent on foot to San Salvador bound by arms, where he was imprisoned for nine months.
With the greatest feeling, I find myself in the need to announce to you: that all the efforts of the supreme national government, and of the State authorities, for the restoration of peace, have been useless: those who speak out and have seized the command in S. Salvador, they have an interest in prolonging the war; because she serves their personal purposes, and they care little for the fate of the peoples.
Aspiring to dominate the entire republic, and to increase their own fortune, they want to stain this privileged soil with blood, and destroy all sources of the wealth of the nation and of the private owner.
If these were not the principles of their conduct, they would have already returned to the party the tranquility that they previously enjoyed: they would have already agreed to some of the many peace treaties that have been proposed to them, almost all of them advantageous to themselves; but they refuse them, because they take care of nothing less than the general good.
When he was in a position to act in early 1829, he sent a division under Colonel Juan Prem to enter Guatemalan territory and take control of Chiquimula.
After these events, Morazán ordered Prem to continue his march with the 1,400 men under his command and occupy the post of San José Pinula, near the Guatemalan capital.
On February 15, one of the largest divisions of Morazán's army, under the command of Cayetano de la Cerda, was defeated in Mixco by federal troops.
A division of federal troops followed him from the capital under the command of Colonel Pacheco in the direction of Sumpango in Sacatepéquez and El Tejar in Chimaltenango with the purpose of attacking him in Antigua.
When he arrived in San Miguelito on March 6 with a smaller army, he was defeated by General Morazán, which once again raised the morale of the men of the liberal leader.
On March 15 when Morazán and his army were on their way to occupy their previous positions, he was intercepted by Colonel Prado's federal troops at the Las Charcas ranch.
Subsequently, Morazán mobilized to regain his former positions in San José Pinula and El Aceituno, and again began a siege on Guatemala City.
To prepare the defense of the city and threatened by the troops of Morazán, Aycinena ordered on March 18, 1829 that the death penalty would be applied to everyone who aided the enemy.
He made a proclamation invoking the defense of sanctity of the altars and issued a legal provision by which liberal leaders Pedro Molina Mazariegos, his son, Esteban Molina, Antonio Rivera Cabezas, and military leaders José Anacleto Ordóñez, Nicolás Raoul and Isidoro Saget were declared enemies of the state.