The first predecessor was established as Bohemian Football Union on 19 October 1901 in Austro-Hungarian constituency Kingdom of Bohemia.

After the partition of Czechoslovakia the association took the name Bohemian-Moravian Football Federation (Czech: Českomoravský fotbalový svaz; ČMFS) until June 2011.

[1] On 3 May 2017, Police of the Czech Republic raided the headquarters of the association and other institutions in connection with the redistribution of state subsidies by the Ministry of Education for 2017.

[2] Another raid on the association's headquarters took place on 16 October 2020, with 20 people detained, including vice-chairman Roman Berbr [cs].

[3] Petr Fousek has served as chairman of the association since 2021, been elected at the 23rd general meeting held on 3 June after defeating Karel Poborský by 15 votes.