Regarded as an important asset to Dong Nai's attacking line in 2012,[1] he recorded 11 goals, helping his team achieve promotion.
In February 2018, Kisekka joined I-League club Gokulam Kerala as a replacement for Nigerian Odafa Okolie, until the end of the season.
[10][11] He scored a sensational volley after his brilliant touch inside the box gave him time and space for the strike.
[12] On 1 April, he scored again in the next round but in a lost cause as a late goal sealed a dramatic win for Bengaluru and knocked Gokulam Kerala out of the competition.
He linked well with Mahmood Al-Ajmi and compatriot Musa Mudde to provide goals to an attacking silhouette which looked lethal throughout the season.
On 6 April 2022, it was announced that I-League club Mohammedan has completed the signing of Kisekka from local Kolkata-based side Bhawanipore.
Under Nikola Stojanović's captaincy, his team for the first time, ran for their maiden national league title in 2021–22 I-League season, but finished as runners-up after a 2–1 defeat to Gokulam Kerala at the end.