The city and a bishopric of Chonai was established at the location of the present Honaz township by the Byzantines during the Arab invasions of the 7th century.
During the reign of Manuel I Komnenos it prospered as a frontier town, a trading and pilgrimage venue for both Christians and Muslims.
The forces of Louis VII of France, en route to the Holy Land as part of the Second Crusade, were attacked here by the Turks in the battle of Mount Cadmus of 1148.
Chonai was plundered twice by local independent warlords backed by the Turks (by Theodoros Mankaphas in late 1180s and by Pseudo-Alexios in 1192).
Honaz is also the homeland of a number of well-known pehlivans (oil wrestlers) including the 3-time national champion Hüseyin Çokal.
A spring that spurts out on the surface only to flow back underground shortly afterwards through the cave in cascading layers of limestone and travertine caused Kaklık to appear very much like a subterranean Pamukkale.