In the 2009–10 season, the team was boosted by the arrivals of Sairol Sahari, Azwan Saleh and Helmi Zambin on loan from DPMM FC, ultimately faring much better in sixth place.

[2] The football team entered the Brunei Super League as a founding member in 2012, winning the championship thanks to stellar performances by future Brunei stars such as Azwan Ali Rahman, Nurikhwan Othman and Abdul Mu'iz Sisa, with the astute signing of Hamizan Aziz Sulaiman from QAF FC the previous year also becoming a major contributing factor.

Despite losing to MS ABDB in the Super League of that year, Indera finally defeated them 2–0 at the Hassanal Bolkiah National Stadium and was awarded the 2015 DST Sumbangsih Cup.

[15] The club won the 2017–18 FA Cup after two winning goals each scored by Zulkhairy Razali and Asri Aspar against MS PDB.

[18] On 13 December 2019, the club officially announced the signing of four foreign players prior to their second leg knockout against Yangon United.

The players were Rodrigo Tosi, Marcelo Carvalho de Souza, Prince Yamoah Boafo and Tekson Tubeng.

The club was at 7th place in the 2020 Super League when it was unexpectedly postponed and eventually cancelled due to the ongoing COVID-19 pandemic in the country, ending the tournament with only two matches completed.

[21] This would occur again prior to the 2021 Super League following to the restrictions reapplied by the Ministry of Health,[22] and finally abandoned after orders made by the Football Association of Brunei Darussalam (FABD).