Indonesia secured five quota places (one in men's compound, two in men's recurve, one in women's compound and one in women's recurve) by virtue of their result at the 2023 World Para Archery Championships in Plzeň, Czech Republic, 2023 Asian Championships in Bangkok, Thailand and 2024 World Qualification Tournament in Dubai, United Arab Emirates.

[2] Indonesian track and field athletes achieved quota places for the following events based on their results at the 2023 World Championships, 2024 World Championships, or through high performance allocation, as long as they meet the minimum entry standard (MES).

Three athletes secured the quotas, following the triumph of winning the silver medal in the BC1/BC2 Teams event at the 2024 World Boccia Paralympic Qualification Tournament in Coimbra, Portugal;[6] meanwhile Muhammad Bintang Satria Herlangga qualified for the games by received the bipartite commission invitation allocation quota.

They secured one of the top eight slots in their respective weight divisions based on the World Para Powerlifting Paralympic Ranking.

[12][13] Three Indonesian swimmers have qualified through the Minimum Qualification Standard (MQS) allocation slots.