Vaprus won the 2005 Esiliiga season and was, for the first time in the club's history, promoted to Estonia's top-flight football league Meistriliiga.

Vaprus finished the 2008 Meistriliiga season in 10th place, but managed to avoid direct relegation due to disbandment of TVMK.

Vaprus itself continued to only operate in youth football until 2014, when they entered their senior team to Estonian lower leagues.

[5] After an eight-year absence, Vaprus returned to top-flight football and moved to the newly renovated 1,501 seater Pärnu Rannastaadion.

Vaprus finished the 2022 season in 10th place, but once again, avoided relegation due to TJK Legion leaving top-flight football for financial difficulties.

Vaprus plays their home matches during winter and early spring months at the Pärnu Rehepapi artificial turf ground and uses the adjacent indoor football facility Pärnu Jalgpallihall, which opened in 2023 and cost over €4.7 million, as training centre during the snowy winter period.