During his tenure at Persipura Jayapura, he won three Indonesia Super League titles in the 2008-09, 2010-11, and 2013 seasons.
In March 2013, the Football Association of Indonesia (PSSI) requested Jacksen to become assistant coach of the Indonesia national team in the face of Saudi Arabia at the 2015 AFC Asian Cup qualification round.
After that in April he was officially appointed by the PSSI as head coach of the Indonesia national team.
[12] In 2017 seasons of Liga 1 Indonesia, he signed a long-term contract with PS Barito Putera.
[14] On 15 April 2014, after press conference match between Persipura Jayapura vs Persebaya Surabaya, Jacksen got into a fight with Greg Nwokolo, because they have personal problems since his tenure as Indonesia national football team coach, the situation eased after the police restrained both of them.