[1] After completing his playing career, Waggoner began coaching at Saint Rose in Albany, New York.
In his one season with the Golden Knights, they reached the Division II College World Series.
The Colonials set a school record for wins (42), won the Atlantic 10 Conference championship, and were among the national leaders in many offensive categories in 2002.
He moved to NC State next, where he served as recruiting coordinator, as well as managing player development, academic support and travel, preparing him well for his future head coaching duties.
[2] During his time at Marshall, 24 players have signed professional contracts, and the Thundering Herd set a program record for wins with 30 in 2008.