Juancho Pérez played from 1994 to 1996 for FC Barcelona, where he won the 1996 Spanish championship, 1995 and 1996 Copa ASOBAL, 1995 EHF Cup Winners' Cup and the 1996 EHF Champions League.

Four years later he won his second bronze medal with the Spanish handball team in the 2000 Olympic tournament.

At the 2004 Games he was part of the Spanish team which finished seventh in the Olympic tournament.

In the latter stages of his national team career he was however only third choice behind Rolando Uríos and Julen Aguinagalde.

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