They last competed in Kategoria Superiore Femra during the 2022–23 season, finishing ninth in a ten-team league.

The team made its debut on 11 January 2014, in a 2–2 draw against FC Kinostudio, with Sara Merovci scoring the first ever goal in club history.

[1] The team's highest achievement came during the 2014–15 season when they finished as runners-up in both the league championship and the domestic cup.

Kukësi played their home matches at Zeqir Ymeri Stadium, renovated in 2012.

Kategoria Superiore Femra: Albanian Women's Cup: