They last competed in Kategoria Superiore Femra during the 2023–24 season, finishing 8th in a ten-team league.

On 11 November 2013, Skënderbeu announced the reorganization of its women's team, appointing Stavrion Lako, a former footballer from the men's side, as coach.

During the initial training sessions, many local girls participated, but over time, only the best were retained.

On 27 December 2013, Skënderbeu played its first match in Korçë, a friendly against Elbasani, which they lost 5–2.

[1] Note: Flags indicate national team as defined under FIFA eligibility rules; some limited exceptions apply.