[1][2] Starting at the lowest division, the Municipal League, KF Shkëndija played their first match against FK Kosmos, winning 4–0.

[3] In the 2010–11 season of the Macedonian First League the club won its first major championship with an unbeaten run of 16 games.

[5] During the 2012–13 season, Shkëndija was embroiled in financial difficulties and as a result, many of its players left the club earlier in the summer.

Note: Flags indicate national team as defined under FIFA eligibility rules; some limited exceptions apply.

Note: Flags indicate national team as defined under FIFA eligibility rules; some limited exceptions apply.