Founded in 2013, KK Navico Akademija FMP had their first senior team in the 2014–15 season.

In 2019, the team finished the regular season of Macedonian Second League as the undefeated club in both groups.

[1] On October 12, 2019, KK Navico Akademija FMP began its journey in the first league with a loss against Gostivar.

[2] On November 9, 2019, KK Navico Akademija FMP won against Rabotnički.

Its European matches BC Akademija FMP plays at SRC Kale .