The NASL folded at the end of that season and the Strikers then jumped to the Major Indoor Soccer League (MISL).
In 1989, Fogarty left the Strikers for good and joined the Tampa Bay Rowdies of the ASL where he served as a player coach from 1989 to 1993.
From 1994 to 1996 Fogarty served as the Technical Director for the Cayman Islands Football Association where he oversaw the youth and Olympic team programs.
The Kansas City Wizards of Major League Soccer (MLS) signed Fogarty as an assistant coach in 1999.
On 15 April 1999, the Kansas City Wizards named Fogarty as its interim coach after Ron Newman resigned following an 0–4 start.