This list of sequenced archaeal genomes contains all the archaea known to have publicly available complete genome sequences that have been assembled, annotated and deposited in public databases.
Methanococcus jannaschii was the first archaeon whose genome was sequenced, in 1996.
[1] Currently in this list there are 39 genomes belonging to Crenarchaeota species, 105 belonging to the Euryarchaeota, 1 genome belonging to Korarchaeota and to the Nanoarchaeota, 3 belonging to the Thaumarchaeota and 1 genome belonging to an unclassified Archaea, totalling 150 Archaeal genomes.
Plasmid pLD8501 CP001732 Plasmid pYN01 CP001405 Plasmid pTPEN01 CP000506 Plasmid pArcpr01 CP001858 Plasmid 1 CP002063 Plasmid 2 CP002064 Plasmid 3 CP002065 Plasmid 4 CP002066 Plasmid 5 CP002067 Plasmid 6 CP002068 Chromosome II CP002922 Plasmid pHH400 CP002923 Chromosome II AY596298 Plasmid pNG100 AY596290 Plasmid pNG200 AY596291 Plasmid pNG300 AY596292 Plasmid pNG400 AY596293 Plasmid pNG500 AY596294 Plasmid pNG600 AY596295 Plasmid pNG700 AY596296 Plasmid PHS1 NC_010366 Plasmid PHS2 NC_010369 Plasmid PHS3 NC_010368 Plasmid PHS4 NC_010367 Plasmid pNRC100 NC_002607 Plasmid pNRC200 NC_002608 Plasmid pHV1 CP001957 Plasmid pHV2 CP001954 Plasmid pHV3 CP001953 Plasmid pHV4 CP001955 Plasmid pHBOR01 CP001691 Plasmid pHBOR02 CP001692 Plasmid pHBOR03 CP001693 Plasmid pHBOR04 CP001694 Plasmid pHBOR05 CP001695 Plasmid pHmuk01 CP001689 Plasmid pHALXA01 CP002840 Plasmid pHALXA02 CP002841 Plasmid pHALXA03 CP002842 Plasmid PL6A FR746101 Plasmid PL6B FR746102 Plasmid PL100 FR746100 Plasmid PL47 AM180089 Chromosome 2 CP001366 Plasmid pHLAC01 CP001367 Plasmid pHTUR01 CP001861 Plasmid pHTUR02 CP001862 Plasmid pHTUR03 CP001863 Plasmid pHTUR04 CP001864 Plasmid pHTUR05 CP001865 Plasmid pHTUR06 CP001866 Plasmid PL131 CR936258 Plasmid PL23 CR936259 Plasmid pMEFER01 CP001697 Large plasmid: L77118 Small plasmid: L77119 Plasmid pMETVU01 CP001788 Plasmid pMETVU02 CP001789 Plasmid pFS01 CP001902 Plasmid pMETOK01 CP002793 Plasmid pMETEV01: CP002070 Plasmid 1 CP000098