was founded on 20 April 2012, after the then Governor of Meta Department Alan Jara and Mayor of Villavicencio Juan Guillermo Zuluaga with the backing of oil company Pacific Rubiales Energy bought the participation rights (ficha) of Categoría Primera B club Academia, based in Bogotá.

[3][4] The club played its first game on 22 July 2012, losing to Alianza Petrolera by a 1–0 score at Academia's former home stadium Estadio Compensar in Bogotá.

[8] On 4 December 2021, the last matchday of the semi-final Group B of the second tournament of the 2021 Primera B season, Llaneros were beaten by Unión Magdalena by a 2–1 score with a couple of goals in quick succession in stoppage time.

However, video footage of Unión Magdalena's winning goal appeared to show the Llaneros players backing off and failing to make an effort to prevent their rivals from scoring.

[10][11][12] In response to the growing backlash, as well as calls from Fortaleza to get the match annulled and Unión Magdalena's promotion reversed,[13] DIMAYOR chairman Fernando Jaramillo ordered the opening of an inquiry on the match events while also requesting the Office of the Attorney General of Colombia to investigate whether any criminal offenses had been committed,[14][15] but on 7 December 2021, Jaramillo stated that the tournament would not be paused and Unión Magdalena's promotion would not be overturned while due process was completed.

In 2024, Llaneros advanced to the Torneo I semi-finals after placing third in the first stage and subsequently won Group B after edging past Unión Magdalena on goal difference.