It operates scheduled domestic, charter, medivac and sightseeing flights.

[1] The company operates two different types of airplanes for various roles: One Beechcraft Super King Air configured for scheduled domestic flights and another configured for medivac flights; Cessna 206 for charter operations.

Mýflug also operates sightseeing flights around Lake Mývatn during the summer months.

[2] Mýflug took over operation of Eagle Air's only remaining route, from Reykjavík Airport to Hornafjörður Airport, Höfn; a government subsidised essential air service.

[3] In October 2024, Mýflug Air secured a government contract for seasonal winter flights to Vestmannaeyjar Airport for the period 2024-2027, running from December to February.