[1] Jovanović made his official debut for the club on 26 September 2007 in a Serbian Cup match against Rad in a 4–1 home win.

On 23 October 2008, he played his first game for Partizan in European competitions against Sampdoria in the first round of the 2008–09 UEFA Cup group stage.

On 28 September 2010, against Arsenal, Jovanović fouled Marouane Chamakh and received a red card, but Vladimir Stojković saved the penalty.

On 12 July 2011, Jovanović joined Polish Ekstraklasa champions Wisła Kraków on a five-year deal for an undisclosed fee from Partizan.

[11] On 3 November 2011, Jovanović made his debut in the Europa League for Wisła against Fulham at Craven Cottage as a substitute for Dudu Biton in the 88th minute.

[23] On 24 August 2017, Jovanović signed a two-year contract with Superleague Greece club AEL for an undisclosed fee.

[26] On 30 June 2019, Jovanović signed a one-year contract with Bosnian Premier League club Borac Banja Luka.

[30] He won his first trophy with the club on 23 May 2021, getting crowned Bosnian Premier League champions one game before the end of the 2020–21 season.