Markus Nüssli (born 9 July 1971) is a Swiss bobsledder who competed in the 1990s.

At the 1998 Winter Olympics in Nagano, he won a silver medal in the four-man event with teammates Marcel Rohner, Markus Wasser and Beat Seitz.

Nüssli also won a silver medal in the four-man event at the 1999 FIBT World Championships in Cortina d'Ampezzo.

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