[1] After several years of competing in the regional championship, Mzuni FC earned the first promotion to Super League of Malawi at the end of the 2000–01 season, winning Mzuzu and Districts Football League.
[3] Mzuni FC were promoted back in the top flight after 2014–15 campaign, winning the Northern Region Football League, with one point ahead the second place, Chilumba Barracks.
[4] The students remained a constant presence in the Super League for the next years, period in which were ranked as follows: 12th (2015), 9th (2016), 10th (2017), 8th (2018), 12th (2019).
Mzuni FC also reached the Airtel Top 8 Cup semi-finals in 2019 losing to Karonga United 4–5 on post match penalties at Mzuzu Stadium.
Mzuzu University (Mzuni) Council announced withdrawal of sponsorship for the team.